WebThis paper presents a GPU-accelerated implementation of BWA-MEM, a widely used algorithm to map genomic sequences onto a reference genome. BWA-MEM … WebIn this work, we accelerate BWA-MEM on the Convey HC2ex platform, consisting of an 8-core Intel Xeon based host processor connected to a co-processor with four Xilinx Virtex-6 FPGAs. No work has been reported in the literature about the acceleration of BWA-MEM. Numerous works are published on the acceleration of other read alignment algorithms.

Heterogeneous Hardware/Software Acceleration of the …

WebNVIDIA ® Parabricks ® is the only GPU-accelerated computational genomics toolkit that delivers fast and accurate analysis for sequencing centers, clinical teams, genomics … WebHere, a GPU-accelerated implementation of BWA-MEM is proposed. The Seed Extension phase, one of the three main BWA-MEM algorithm phases that requires between 30% … cyclops festival

Hardware acceleration of BWA-MEM genomic short read

WebApr 4, 2016 · A GPU-accelerated implementation of BWA-MEM is proposed, which obtains a twofold overall application-level speedup, which is the maximum theoretically … WebApr 4, 2016 · Here, a GPU-accelerated implementation of BWA-MEM is proposed. The Seed Extension phase, one of the three main BWA-MEM algorithm phases that requires … cyclops filter